TBLASTN 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= RL44A_YEAST P0CX27 60S ribosomal protein L42-A
{ECO:0000303|PubMed:9559554} (L41) (Large ribosomal subunit protein
eL42-A {ECO:0000303|PubMed:24524803}) (YL27) (YP44)

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-423                                                         169    1e-48
  scaffold-424                                                         165    1e-47


> scaffold-423
Length=1446679

 Score =  169 bits (427),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 85/105 (81%), Positives = 89/105 (85%), Gaps = 0/105 (0%)
 Frame = +1

Query  2       VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK  61
               VN+PKTR TYCKGK CRKH  HKVT YKAGKASLF  GKRRYDRKQSGFGGQTKPVFHKK
Sbjct  650467  VNIPKTRNTYCKGKECRKHQPHKVT*YKAGKASLFK*GKRRYDRKQSGFGGQTKPVFHKK  650646

Query  62      AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF  106
               AKTTKK+VLRLEC  CK + Q+ LKRCKHFELGGEKK K  AL F
Sbjct  650647  AKTTKKIVLRLECTVCKVKHQIALKRCKHFELGGEKKTKNAALNF  650781


> scaffold-424
Length=148259

 Score =  165 bits (418),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 84/105 (80%), Positives = 88/105 (84%), Gaps = 0/105 (0%)
 Frame = +1

Query  2       VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK  61
               VN+PKTR TYCKGK CRKH  HKVT YKAGKASLF  GKRRYDRKQSGFGGQTKPVFHKK
Sbjct  143383  VNIPKTRNTYCKGKECRKHQPHKVT*YKAGKASLFK*GKRRYDRKQSGFGGQTKPVFHKK  143562

Query  62      AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF  106
               AKTTKK+VLRLEC  CK +  + LKRCKHFELGGEKK K  AL F
Sbjct  143563  AKTTKKIVLRLECTVCKVKH*IALKRCKHFELGGEKKTKNAALNF  143697



Lambda      K        H        a         alpha
   0.320    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195901825


  Database: X5.fasta
    Posted date:  Feb 18, 2021  11:04 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40